kg_covid_19.transform_utils.gocam_transform package

Submodules

kg_covid_19.transform_utils.gocam_transform.gocam_transform module

class kg_covid_19.transform_utils.gocam_transform.gocam_transform.GocamTransform(input_dir: str = None, output_dir: str = None)

Bases: kg_covid_19.transform_utils.transform.Transform

GocamTransform parses GO-CAMs that have been subjected to RDF edge project (REP) pattern.

parse(data_file: str, input_format: str, compression: Optional[str] = None) → None

Processes the data_file.

Args:

data_file: data file to parse input_format: format of input file compression: compression

Returns:

None

run(data_file: Optional[str] = None, **kwargs) → None

Method is called and performs needed transformations to process an ontology.

Args:

data_file: data file to parse

Returns:

None.

Module contents

class kg_covid_19.transform_utils.gocam_transform.GocamTransform(input_dir: str = None, output_dir: str = None)

Bases: kg_covid_19.transform_utils.transform.Transform

GocamTransform parses GO-CAMs that have been subjected to RDF edge project (REP) pattern.

parse(data_file: str, input_format: str, compression: Optional[str] = None) → None

Processes the data_file.

Args:

data_file: data file to parse input_format: format of input file compression: compression

Returns:

None

run(data_file: Optional[str] = None, **kwargs) → None

Method is called and performs needed transformations to process an ontology.

Args:

data_file: data file to parse

Returns:

None.